Magnus Arntzen
Staff Engineer
-
BiO Bernd Thiede Group (Cell Death Proteomics)
Norwegian
Phone
+47-22840512
Username
Visiting address
Forskningsparken
Gaustadalléen 21
0349 OSLO
Postal address
Postboks 1125 Blindern
0317 OSLO
Academic interests
Proteomics, Bioinformatics, Cell Biology
Position held
- 2009 - present: Principle engineer, Thiede Group, Biotechnology Centre of Olso.
Main tasks at BiO
- Running and maintenance of HPLC and mass spectrometry intrumentation.
- Software support and development.
- Data analysis.
Background
Research:
- 2009 - 2009: Department engineer and bioinformatics, Microbial Proteomic Resource, Gades institute, University of Bergen.
- 2006 - 2009: Department engineer, PROBE proteomic platform, Department of Biomedicine, University of Bergen.
- 2000 - 2006: Bioengineer III, II and special bioengineer, Laboratory for clinical biochemistry, Haukeland University Hospital.
Teaching:
- 2011 - 2011: Part of KJM9480BTS Biostruct Proteomics basics. Subject: Proteomics data analysis. Biotechnology Centre of Olso.
- 2010 - 2011: Part of KJB320/420, Subject: Proteomics data analysis. University of Life Sciences. Ås.
Education:
- 2008 - 2009: MSc, Medical Cell Biology, University of Bergen.
- 1997 - 2000: BSc, Bioengineering, Undergraduate School in Østfold, Norway.
Scientific communication
- 2011: Poster presentation, 10th World Congress of Human Proteome Organization HUPO, Geneva, Switzerland.
- 2010: Talk, 6th Norwegian National Proteomics Meeting, Trondheim, Norway.
- 2008: Poster presentation, 7th World Congress of Human Proteome Organization HUPO, Amsterdam, The Netherlands.
- 2007: Poster presentation, 3rd Norwegian National Proteomics Meeting, Ås, Norway, 2007 (poster presentation)
- 2006: Poster presentation, 2nd Norwegian National Proteomics Meeting, Bergen, Norway.
Publications
Full list of publications (PubMed listing)
- Koehler, Christian; Arntzen, Magnus; De Souza, Gustavo Antonio & Thiede, Bernd (2013). An Approach for Triplex-Isobaric Peptide Termini Labeling (Triplex-IPTL). Analytical Chemistry. ISSN 0003-2700. 85(4), s 2478- 2485 . doi: 10.1021/ac3035508
- Arntzen, Magnus & Thiede, Bernd (2012). ApoptoProteomics, an Integrated Database for Analysis of Proteomics Data Obtained from Apoptotic Cells. Molecular & Cellular Proteomics. ISSN 1535-9476. 11(2) . doi: 10.1074/mcp.M111.010447
- Khan, R; Rukke, HV; Ricomini, AP; Fimland, G; Arntzen, Magnus; Thiede, Bernd & Petersen, Fernanda Cristina (2012). Extracellular Identification of a Processed Type II ComR/ComS Pheromone of Streptococcus mutans. Journal of Bacteriology. ISSN 0021-9193. 194(15), s 3781- 3788 . doi: 10.1128/JB.00624-12
- Koehler, Christian; Arntzen, Magnus; Treumann, Achim & Thiede, Bernd (2012). A Rapid Approach for Isobaric Peptide Termini Labeling. Methods in Molecular Biology. ISSN 1064-3745. 893, s 129- 141 . doi: 10.1007/978-1-61779-885-6_10
- Koehler, Christian; Arntzen, Magnus; Treumann, Achim & Thiede, Bernd (2012). Comparison of data analysis parameters and MS/MS fragmentation techniques for quantitative proteome analysis using isobaric peptide termini labeling (IPTL). Analytical and Bioanalytical Chemistry. ISSN 1618-2642. 404(4), s 1103- 1114 . doi: 10.1007/s00216-012-5949-z
- Patron, Juan P.; Fendler, Annika; Bild, Matthias; Jung, Ulrike; Müller, Henrik; Arntzen, Magnus; Piso, Chloe; Stephan, Carsten; Thiede, Bernd; Mollenkopf, Hans-Joachim; Jung, Klaus; Kaufmann, Stefan H.E. & Schreiber, Jörg (2012). MiR-133b Targets Antiapoptotic Genes and Enhances Death Receptor-Induced Apoptosis. PLoS ONE. ISSN 1932-6203. 7(4) . doi: 10.1371/journal.pone.0035345
- Arntzen, Magnus; Koehler, Christian; Barsnes, Harald; Berven, Frode; Treumann, Achim & Thiede, Bernd (2011). IsobariQ: Software for Isobaric Quantitative Proteomics using IPTL, iTRAQ, and TMT . Journal of Proteome Research. ISSN 1535-3893. 10(2), s 913- 920 . doi: 10.1021/pr1009977
- Arntzen, Magnus; Koehler, Christian; Treumann, Achim & Thiede, Bernd (2011). Quantitative proteome analysis using isobaric peptide termini labeling (IPTL) . Methods in Molecular Biology. ISSN 1064-3745. 753, s 65- 76 . doi: 10.1007/978-1-61779-148-2_5
- Arntzen, Magnus & Thiede, Bernd (2011). ApoptoProteomics: An integrated database for analysis of proteomics data obtained from apoptotic cells. Molecular & Cellular Proteomics. ISSN 1535-9476. 10(12) . doi: 10.1074/mcp.M111.010447
- De Souza, Gustavo; Arntzen, Magnus Øverlie; Fortuin, Suereta; Schürch, Anita; Målen, Hiwa; McEvoy, Christopher R; Van Soolingen, Dick; Thiede, Bernd; Warren, Robin M & Wiker, Harald G (2011). Proteogenomic analysis of polymorphisms and gene annotation divergences in prokaryotes using a clustered mass spectrometry-friendly database. Molecular & Cellular Proteomics. ISSN 1535-9476. 10(1) . doi: 10.1074/mcp.M110.002527
- Juse, Ulrike; Arntzen, Magnus; Højrup, Peter; Fleckenstein, Burkhard & Sollid, Ludvig Magne (2011). Assessing high affinity binding to HLA-DQ2.5 by a novel peptide library based approach. Bioorganic & Medicinal Chemistry. ISSN 0968-0896. 19(7), s 2470- 2477 . doi: 10.1016/j.bmc.2011.01.057
- Koehler, Christian; Arntzen, Magnus; Strozynski, Margarita Anna; Treumann, Achim & Thiede, Bernd (2011). Isobaric Peptide Termini Labeling Utilizing Site-Specific N-Terminal Succinylation. Analytical Chemistry. ISSN 0003-2700. 83(12), s 4775- 4781 . doi: 10.1021/ac200229w
- Lewis, Aurelia Eva; Sommer, Lilly; Arntzen, Magnus; Strahm, Yvan; Morrice, Nicholas A.; Divecha, Nullin & D Santos, Clive (2011). Identification of Nuclear Phosphatidylinositol 4,5-Bisphosphate-Interacting Proteins by Neomycin Extraction. Molecular & Cellular Proteomics. ISSN 1535-9476. 10(2) . doi: 10.1074/mcp.M110.003376
- Dørum, Siri; Arntzen, Magnus; Qiao, Shuo Wang; Holm, Anders; Koehler, Christian; Thiede, Bernd; Sollid, Ludvig Magne & Fleckenstein, Burkhard (2010). The Preferred Substrates for Transglutaminase 2 in a Complex Wheat Gluten Digest Are Peptide Fragments Harboring Celiac Disease T-Cell Epitopes . PLoS ONE. ISSN 1932-6203. 5(11) . doi: 10.1371/journal.pone.0014056
- De Souza, Gustavo; Arntzen, Magnus Øverlie & Wiker, Harald G (2010). MSMSpdbb: providing protein databases of closely related organisms to improve proteomic characterization of prokaryotic microbes . Bioinformatics. ISSN 1367-4803.
- Arntzen, Magnus Øverlie; Osland, Christoffer Leif; Raa, Christopher Rasch-Olsen; Kopperud, Reidun Kristin; Doskeland, Stein Ove; Lewis, Aurelia & D Santos, Clive (2009). POSTMan (POST-translational modification analysis), a software application for PTM discovery. Proteomics. ISSN 1615-9853. 9(5), s 1400- 1406 . doi: 10.1002/pmic.200800500
- Målen, Hiwa; Berven, Frode; Søfteland, Tina; Arntzen, Magnus Øverlie; D Santos, Clive; De Souza, Gustavo Antonio & Wiker, Harald G (2008). Membrane- and membrane associated proteins in Triton X-114 extracts of Mycobacterium bovis BCG identified using a combination of gel-based and gel-free fractionation strategies. Proteomics. ISSN 1615-9853. 8(9), s 1859- 1870 . doi: 10.1002/pmic.200700528
- Khan, Rabia; Rukke, Håkon Valen; Filho, Antonio Pedro Ricomini; Fimland, Gunnar; Arntzen, Magnus; Thiede, Bernd & Petersen, Fernanda Cristina (2012). Extracellular Identification of a Processed Type II ComR/ComS Pheromone of Streptococcus mutans. Journal of Bacteriology. ISSN 0021-9193. 194(15), s 3781- 3788 . doi: 10.1128/JB.00624-12
- D Santos, Clive; Lewis, Aurelia & Arntzen, Magnus Øverlie (2009). New tools to enhance the detection of post-translational modifications: Development and application of a mass spectrometry-based proteomic software and of specific antibodies detecting propionylated lysines.
- Målen, Hiwa; Berven, Frode; Søfteland, Tina; Arntzen, Magnus Øverlie; D Santos, Clive & Wiker, Harald G (2008). Membrane- and membrane-associated proteins in Triton X-114 extracts of Mycobacterium bovis BCG identified using a combination of gel-based and gel-free fractionation strategies.
- Målen, Hiwa; Berven, Frode; Søfteland, Tina; Arntzen, Magnus Øverlie; D Santos, Clive & Wiker, Harald G (2008). Membrane- and membrane-associated proteins in Triton X-114 extracts of Mycobacterium bovis BCG identified using a combination of gel-based and gel-free fractionation strategies.
Published Aug 22, 2011 10:51 AM
- Last modified Sep 5, 2012 12:50 PM